rs33105041 SNP Detail

Summary

• ID
  rs33105041
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95037466 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTAAAAGGT TACTGGTGAT AAGAAAAAAG CAGTTGGATT
  GGTCTGAAAA CAGGCAGGTC CCGGGGAAAT AGAAGGAAAC CCAAGGACCG CAATCCAGCA
  M
  TCACTCACCT TCGGAGGGTA AGGTAATGGT TCAGGACTCA TCGTTTGGTG GGGCTCATGG
  GTGCAGAGGC CAAGAGAGCT GCTGACTCTT TGGCATCTGA                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46771811	NES10666984	PERLEGEN	MM_PANEL2	f	SNP	C	C	A	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33105041					SNP	C	C	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46771811	NES10666984	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95037466 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr580821	regulatory region 580821			430 bp distal
Scnm1	sodium channel modifier 1			Intron
				Noncoding-Transcript-Variant
Tmod4	tropomodulin 4			946 bp downstream
Tssr30498	transcription start site region 30498			1280 bp upstream