rs33104731 SNP Detail

Summary

• ID
  rs33104731
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:138858839 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTATCATC AAGATGAGAG
  CATGGCCATA TCCAGGCAGA GCTGAGAGTT CTATGTCTTC ATCCCAAGGC TGCTAGTGGA
  AGACTGACTT CCAGGCACCT AGGGTGAGAG TATTAAGCCC ACATCCACAG TGACACACCT
  ACTCCTATCA GGTCACACCT ATTCCAACAA GGCCACACCT CCAAATGGTG CCACTCCCTG
  R
  TCCAAGAATA TAGAAAGGAT CACAGATGTC TTCCTCAAAT GCTCTGTACC TTAATTTTGA
  GATAACCTCT CTCCTTAAGC CTGGAGCTTG CTGATTTGGC TGGGATGAGA GGCCCACAGG
  CCCTAGGAAT TCACCTGTCT CCAGTTCCCT GGCATATGCC TGGTTTTCTA TGTGGGTACC
  GGGATTGAAC TCAAGGCCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss45737731	mCV25208641	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	G
ss144560979	ENSMUSSNP2283052	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		G		G
ss321703472	CHEV_5_139349038	CHEVERUD	SCREENING_POP	f	SNP					G		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs33104731					SNP	A	G	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:138858839 () rs orientation: forward

Symbol	Name	Function Class
Gm31891	predicted gene, 31891	within coordinates
Rr623122	regulatory region 623122	1797 bp distal
Rr623123	regulatory region 623123	1929 bp proximal