rs33103858 SNP Detail

Summary

• ID
  rs33103858
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95028700 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAAGTAGAT GACAGGCCAG
  AGTGTGGGAA AGGAAAGCTG ACCATTCTGT CGTTTCTCCC TTCGATCCTG CAGAGACCTA
  TGAAAGGCTG GAGGCTGACA AAAAGAAGCA GGTTCACAAG AAGCGGAAGT GCCCTGGGCC
  AATAATCACC TACCACTCAG TGACGGTGCC GCTTGTTGGG GAGCCCGGCC CCAAGGAGGA
  R
  AATGTGGACG TGGAAGGGTG AGTGAACCCC GTGCCCCCGG CTTCTCTAGG AGTTTACTTT
  TCTCACTGCA CACATTCAGA CCTCAGCTCA TTCCTTCCCT CTGCTGGCTG CCAGCACCAG
  GTAAGTAGTC TCTGAGCGGG GAGTGAGGAT GATCAAAGAG AAGACAGCAG ACACAGGACA
  AGAGAGGGGT CTGTCAGTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46771700	NES10667334	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33103858					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46771700	NES10667334	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95028700 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
D3Umi9	DNA segment, Chr 3, University of Michigan 9			899 bp proximal
Rr580818	regulatory region 580818			153 bp proximal
Tssr30490	transcription start site region 30490			1131 bp upstream
Vps72	vacuolar protein sorting 72			Coding-Synonymous
				Noncoding-Transcript-Variant