rs33102920 SNP Detail

Summary

• ID
  rs33102920
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95027106 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTTTAATC CCTGTGCTCA
  GGAGGCAGAG ACGGGCAGGT CTATGGGTTC AGGACAGCCA GAGCTACACA GAGAAATCTT
  TATCTGGAGT CTTGGTGGGG TTGTATGTAT GGGGAGGGGT GTCAGCGTGA CTGAGTTCCA
  GTTAGTGTAA AATAACAATT GCTTGGTTGG TTTTTCCTGT TTTGAGAGAA AGCAATATCG
  Y
  CTAGTCAAAA CAGGCCAGAC ATAGTGGTGG AGATCTGTGA TCTCAGTCTA TGGCAGACAG
  AGACAGCAGA ATCAGGCATT CAAGGCCTTT CTGGATTGTA TGAGCCTTGA CTCTAACGGG
  AAATGTCTAA GTCAGGGAGA GATTTCTAGG CGGGCTCTGA CCAGGCTTGA GAGGACCGTG
  TCCACGTGGA GGAACAGCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46771688	NES10667393	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33102920					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46771688	NES10667393	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95027106 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr580818	regulatory region 580818			1747 bp proximal
Vps72	vacuolar protein sorting 72			Intron
				Noncoding-Transcript-Variant