rs33102918 SNP Detail

Summary

• ID
  rs33102918
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95027058 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGATCAGGC AGTTAAGAGT
  GTCTGAAGTA GCCAGGCATG GTGCTCATAC TTTTAATCCC TGTGCTCAGG AGGCAGAGAC
  GGGCAGGTCT ATGGGTTCAG GACAGCCAGA GCTACACAGA GAAATCTTTA TCTGGAGTCT
  TGGTGGGGTT GTATGTATGG GGAGGGGTGT CAGCGTGACT GAGTTCCAGT TAGTGTAAAA
  W
  AACAATTGCT TGGTTGGTTT TTCCTGTTTT GAGAGAAAGC AATATCGCCT AGTCAAAACA
  GGCCAGACAT AGTGGTGGAG ATCTGTGATC TCAGTCTATG GCAGACAGAG ACAGCAGAAT
  CAGGCATTCA AGGCCTTTCT GGATTGTATG AGCCTTGACT CTAACGGGAA ATGTCTAAGT
  CAGGGAGAGA TTTCTAGGCG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46771685	NES10667392	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T	T	T	T	T	T	A	T	T	T
ss135510008	ENSMUSSNP3426893	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33102918					SNP	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46771685	NES10667392	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95027058 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr580818	regulatory region 580818			1795 bp proximal
Vps72	vacuolar protein sorting 72			Intron
				Noncoding-Transcript-Variant