rs33102804 SNP Detail

Summary

• ID
  rs33102804
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95043349 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTGTGTGG GGGGTGGATT
  TTCTAGACAG TGTGGCCTGG AACTTCCGGT GTTCTTGCAT CATGACTGCT GAGATTAGGA
  GTGTGACAAC CACACTCTGA GGTGCAGGCT TAGGAGTACC GTCACCACGG GCCTTGAAGA
  CCTAGAAACT TTCCCCTCTG TTCCCACCTA CAAATCTGTT CAACCCAGTT GTTTGTATCC
  Y
  TGTCTTCCAG CAGCCCACAA GCTTTTTAAG AGCTGAAATC AGTTCCTTTC AACATTGTGC
  CTCTAAACCC TGGCATAGTC TCAGTCATGT GGGAGTTTAA AAGATGATTG AAAGCTGCCA
  GGCATGGCAG TGTACCCCTT TAATCCGAGC ACTTGGGAAG CAGAGGCAGA CGGATTTCTG
  AGTTGGAGGC CAGCCTGGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46771865	NES10666640	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33102804					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46771865	NES10666640	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95043349 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13498	CpG island 13498	1983 bp distal
D3Umi10	DNA segment, Chr 3, University of Michigan 10	1799 bp distal
Lysmd1	LysM, putative peptidoglycan-binding, domain containing 1	Intron
Rr367480	regulatory region 367480	1949 bp downstream
Rr580823	regulatory region 580823	1940 bp distal
Rr580824	regulatory region 580824	within coordinates
Rr580825	regulatory region 580825	267 bp distal
Rr580826	regulatory region 580826	311 bp proximal
Tssr968	transcription start site region 968	1885 bp upstream