rs33101574 SNP Detail

Summary

• ID
  rs33101574
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:128136053 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAGGACATGA ACGATGGTTG CATTCATTAT ATAATCAGAG
  GCCATGACCT CAGTAACTAC CCAAAAAGGA TTCCTGGGAC AGTAACTGCA GGTAGAGGTG
  K
  TCGGGGGTGG GGTGAGGCAG ACAGGACAGG GAACAAGGCT TAGAGACCAG GAAAGATAGT
  GGAGCTCCTG AACAGATGAG ATGTTCAGAA TCTGCAAAG                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	MSM/Ms
ss45237499	mCV22523411	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	T
ss147556601	ENSMUSSNP6327822	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	MSM/Ms
rs33101574					SNP	G	G	G	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:128136053 () rs orientation: forward

Symbol	Name	Function Class
Rr397297	regulatory region 397297	1053 bp upstream
Rr564694	regulatory region 564694	399 bp proximal
Rr564695	regulatory region 564695	1024 bp proximal
Rr564696	regulatory region 564696	1672 bp proximal
Tssr26154	transcription start site region 26154	866 bp downstream
Tssr26155	transcription start site region 26155	902 bp downstream