rs33101523 SNP Detail

Summary

• ID
  rs33101523
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95043276 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGAGATCCA GAACTATTGA
  GTCTTGCTCG GAAGTGGGAG TGGATAGTAT TTGATGTGGG GTTTTGTGTG TGTGTGTGTG
  TGGGGGGTGG ATTTTCTAGA CAGTGTGGCC TGGAACTTCC GGTGTTCTTG CATCATGACT
  GCTGAGATTA GGAGTGTGAC AACCACACTC TGAGGTGCAG GCTTAGGAGT ACCGTCACCA
  Y
  GGGCCTTGAA GACCTAGAAA CTTTCCCCTC TGTTCCCACC TACAAATCTG TTCAACCCAG
  TTGTTTGTAT CCTTGTCTTC CAGCAGCCCA CAAGCTTTTT AAGAGCTGAA ATCAGTTCCT
  TTCAACATTG TGCCTCTAAA CCCTGGCATA GTCTCAGTCA TGTGGGAGTT TAAAAGATGA
  TTGAAAGCTG CCAGGCATGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss46771862	NES10666638	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs33101523					SNP	C	C	C	C	C	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46771862	NES10666638	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95043276 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13498	CpG island 13498	1910 bp distal
D3Umi10	DNA segment, Chr 3, University of Michigan 10	1726 bp distal
Lysmd1	LysM, putative peptidoglycan-binding, domain containing 1	Intron
Rr367480	regulatory region 367480	1876 bp downstream
Rr580823	regulatory region 580823	1867 bp distal
Rr580824	regulatory region 580824	within coordinates
Rr580825	regulatory region 580825	194 bp distal
Rr580826	regulatory region 580826	384 bp proximal
Scnm1	sodium channel modifier 1	1991 bp upstream
Tssr968	transcription start site region 968	1958 bp upstream
Tssr34420	transcription start site region 34420	1977 bp upstream
Tssr34421	transcription start site region 34421	1948 bp upstream