rs33101521 SNP Detail

Summary

• ID
  rs33101521
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95042398 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGAAGCCT GGTACAATCA
  TCCTGCTCCC CAGTGAGGGA AAGACGCCTG GAGCATCAAT TGGAGCCTGG AGACACCCTG
  GCTGGATTAG CACTCAAATA CGGGGTAACG GTGAGTCTTC CAGAATTGAG ATAGTCCCGA
  GAAAGTGGGT GGCCCGCTAA GATGCCCCCT CTCACATTAT TTAAATTCTA TTATGGTCTG
  K
  TTTTTTTCTT CCTTATTTTG CTTTCACATC TCAGCAGAGC ACTGTTGGGA CAGATCTGCC
  CAACTATCCC AGTGGGAGGA GCAACTCCTG TAGATGGTGA GGGAGGTGGG TGAGTGGGGG
  CGGGGCTTAC AGCCATTAAC TGGACTTGTG TCCCTATCAA CTTAAGACTG ATAAACCAGT
  TTGATCAAGG TCGAATCACT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46771859	NES10666787	PERLEGEN	MM_PANEL2	f	SNP	T	T	G	G	T	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33101521					SNP	T	T	G	G	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46771859	NES10666787	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95042398 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13498	CpG island 13498	1032 bp distal
D3Umi10	DNA segment, Chr 3, University of Michigan 10	848 bp distal
Lysmd1	LysM, putative peptidoglycan-binding, domain containing 1	Intron
Rr367480	regulatory region 367480	998 bp downstream
Rr580823	regulatory region 580823	989 bp distal
Rr580824	regulatory region 580824	within coordinates
Rr580825	regulatory region 580825	663 bp proximal
Rr580826	regulatory region 580826	1262 bp proximal
Scnm1	sodium channel modifier 1	1113 bp upstream
Tssr34419	transcription start site region 34419	1174 bp upstream
Tssr34420	transcription start site region 34420	1099 bp upstream
Tssr34421	transcription start site region 34421	1070 bp upstream