rs33101515 SNP Detail

Summary

• ID
  rs33101515
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95041407 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCGACTGTG AGACTACGAT
  AAATTCCCCT ACGCCTACTT CGCTGCTCCT TTAGGCCACC GTAGAAAGAG TACACTATCG
  CCTTCTCTGC TTCCGGTTTC TTTCTTGTTG AATCTGTACT TCCGGGGATG ATGTTCCACG
  CTTGCGTCGC GCGAACCGGA AGACCCGCCT CCAGCGCCCT GAGGGGGCCT GCATTTCCTA
  Y
  AATACTTTGA GACGCTGTGC CTTTTGGGAA ATGAAGTCTT TTGGTTATTT ATTTTATTTT
  TTTATTTTTT TGAAGAGCAC ACTGCTCACC TGGACACAGG ACCTCACATC TCGAAGGATC
  CAGGTGTTCG GAGACTCAAG ATCCTGTATG TGGAGCCGGA ATTTCAGGGT GGGACCTTCC
  TGATGTGGAG CGAGGCGTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46771850	NES10666784	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33101515					SNP	C	C	C	C	T	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46771850	NES10666784	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95041407 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13498	CpG island 13498	41 bp distal
D3Umi10	DNA segment, Chr 3, University of Michigan 10	within coordinates
Lysmd1	LysM, putative peptidoglycan-binding, domain containing 1	mRNA-UTR
Rr367480	regulatory region 367480	7 bp downstream
Rr580822	regulatory region 580822	1507 bp distal
Rr580823	regulatory region 580823	within coordinates
Rr580824	regulatory region 580824	3 bp proximal
Rr580825	regulatory region 580825	1654 bp proximal
Scnm1	sodium channel modifier 1	122 bp upstream
Tssr34419	transcription start site region 34419	183 bp upstream
Tssr34420	transcription start site region 34420	108 bp upstream
Tssr34421	transcription start site region 34421	79 bp upstream