rs33101164 SNP Detail

Summary

• ID
  rs33101164
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95017133 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGTAGTTC AGAATTAGAG
  AACTTACCTA TCTTATACAC TACTCTGAAT TTAATCCTTG GCATTAGAAA AAAAAAACAG
  AAACAAAAAT AAAACCAAAA AACAGTAAAA GAATGAATAC CTTCTTCATT TAGTCTTTCA
  TTGTTTACCT AAACCTAGCC TATTGCAGGC ATTCACATTC GTAGTATAGA CAGATACAAT
  Y
  CTTGGCCTCA CTTGGGATGT ACCTTTGTAG TAGAATGCTT TTCTAGAGTT CCTGAGACCT
  TGGGTTCCAT TCCCAGCAAA GAGGGGGAAA CACACACACA CACACACACA CACACACTCC
  AAAACAAAAA CAAAAACAAA CTCTTCCCTT AACCTAGTAG CATGAAACAC GGAGAAGACC
  ATAGCAGACC AGTCTATGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46771574	NES10667935	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33101164					SNP	C	C	C	C	T	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46771574	NES10667935	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95017133 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13497	CpG island 13497	1047 bp proximal
Gm65644	predicted gene, 65644	420 bp downstream
Rr367478	regulatory region 367478	1962 bp downstream
Rr367479	regulatory region 367479	1051 bp upstream
Rr580815	regulatory region 580815	1699 bp distal
Rr580816	regulatory region 580816	710 bp proximal
Rr580817	regulatory region 580817	1523 bp proximal
Tssr30489	transcription start site region 30489	1191 bp upstream
Vps72	vacuolar protein sorting 72	1220 bp upstream