rs33100861 SNP Detail

Summary

• ID
  rs33100861
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95033091 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAATACAG AGACATCGAC
  GAAGATGAGA TCCTAAGGAC CCTGAGCCCT GAAGAGCTAG AACAGCTGGA CTGTGAGCTA
  CAAGAAATGG ATCCTGAGGT AGGAGCACAG GCCAGGGCAT CCCTTTGTAT GTGGGAAGGA
  GTGATTCTAG GTAGCTGAGA ACAAGACATG AAATCCCAAA AGGACCAGGG AATATCTGTC
  Y
  GGAGAGTGCT TAATTTGTTC CCCAAAATTC ATCCCTAAGA ACATGCTCTT GCCAGCTGGC
  CTGAGACAAC GTGACCAGAC AAAGAAGAGT CCAACAGGGC CACTGGACAG AGATGCCCTA
  TTGCAGTACC TGGAGCAACA GGCGCTAGAA GTCAAAGAGC GTGATGACTT GGTGCCCTAC
  ACTGGCGAGA AGAAGGGTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46771751	NES10667116	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33100861					SNP	T	T	T	T	T	C	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46771751	NES10667116	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95033091 () rs orientation: forward

Symbol	Name	Function Class
Rr580819	regulatory region 580819	1255 bp distal
Rr580820	regulatory region 580820	410 bp distal
Tmod4	tropomodulin 4	Intron
Tssr967	transcription start site region 967	1331 bp downstream
Tssr30491	transcription start site region 30491	1315 bp downstream
Tssr30492	transcription start site region 30492	1220 bp downstream
Tssr30493	transcription start site region 30493	409 bp upstream
Tssr30494	transcription start site region 30494	426 bp upstream
Tssr30495	transcription start site region 30495	438 bp upstream
Tssr30496	transcription start site region 30496	460 bp upstream
Tssr30497	transcription start site region 30497	1645 bp upstream