rs33100700 SNP Detail

Summary

• ID
  rs33100700
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:154871674 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCCGATGG GAAGGGAGAG
  CTTCAGTAAC ATGCACATAA AGGCAGAATG GTTGGGTGAT GGGTGCCAGC CCCTGCTTGG
  TCCCCTGAGA GTGGTGTCCA ATAGCCCAGG TTACCCTCAC ACAGACAGAA GATAGAGCCA
  TCCCTTTGCG TGGGTGTCCA GTCAGGGTCC ACTCTCAATG CCTCATCCAC AACAGATAAT
  R
  GTTTAATAAG CGATCTGTTT TTTATTTAAA GGGTCGACAG TAAAACCCAG ATCACATTTC
  TCACTTGGTG GGTTAAAAAA CCGCTTACGC TCATTTCTGC AATGTAAAGC GACACTCTAT
  CAAATCAAAC ATTTCCAGAT GGGCCCAGCT TGGCGGAGGA GAGCCGTGTA TAGGTGGGGA
  AAGTAGGCAA GGAACACCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46771948	NES10983079	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33100700					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46771948	NES10983079	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:154871674 () rs orientation: forward

Symbol	Name	Function Class
Rr1566	regulatory region 1566	within coordinates
Rr606263	regulatory region 606263	1024 bp distal
Rr606264	regulatory region 606264	within coordinates
Rr606265	regulatory region 606265	191 bp proximal
Rr606266	regulatory region 606266	823 bp proximal