rs33100696 SNP Detail

Summary

• ID
  rs33100696
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:154871280 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCATCAGACC TCAAGGAACA
  GAGAGGATCA AAGCTGATAC CCCATACATC AGGCAGGGCA GCTCAGCATT GGTCTTGCCC
  AGGAAGTGGG AGCCAATCAT CTCCCCCTTC CTCGCCTCCC ACATCCACTG TGTCCTTGCT
  TAGAGGCTTG ACTAGCCTGC AGCTCCAGGT CCCTGTGTGC AATACTGGGC ACCGACCATG
  Y
  GCATGTCCAT CAGCACAATG CAAAAGCTAG ATGCTACACT TCCCTAGCTT CCAGACAGCT
  CCATCCAGGG TCACAGCACA GTGGAATCCC AGCACCCCAG AGCAGGGGTC AAGGGAATGA
  ATCCCCCAGG AAGCCCTATG ATGCATGACC ATGGCTCTGG AGATCCATCA TTCAGACTAT
  AGCTCCTTCA GACAACCCGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46771942	NES10983077	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33100696					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46771942	NES10983077	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:154871280 () rs orientation: forward

Symbol	Name	Function Class
Rr1566	regulatory region 1566	within coordinates
Rr606263	regulatory region 606263	630 bp distal
Rr606264	regulatory region 606264	within coordinates
Rr606265	regulatory region 606265	585 bp proximal
Rr606266	regulatory region 606266	1217 bp proximal