rs33100393 SNP Detail

Summary

• ID
  rs33100393
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95041346 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGGCTTAC TTTGAGCACA
  TTGAGTTGAC TCCAGTCGTC CCCTTCCCTC TTAAAAGACA TAGCGACTGT GAGACTACGA
  TAAATTCCCC TACGCCTACT TCGCTGCTCC TTTAGGCCAC CGTAGAAAGA GTACACTATC
  GCCTTCTCTG CTTCCGGTTT CTTTCTTGTT GAATCTGTAC TTCCGGGGAT GATGTTCCAC
  R
  CTTGCGTCGC GCGAACCGGA AGACCCGCCT CCAGCGCCCT GAGGGGGCCT GCATTTCCTA
  CAATACTTTG AGACGCTGTG CCTTTTGGGA AATGAAGTCT TTTGGTTATT TATTTTATTT
  TTTTATTTTT TTGAAGAGCA CACTGCTCAC CTGGACACAG GACCTCACAT CTCGAAGGAT
  CCAGGTGTTC GGAGACTCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46771847	NES10666783	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33100393					SNP	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46771847	NES10666783	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95041346 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13498	CpG island 13498	within coordinates
D3Umi10	DNA segment, Chr 3, University of Michigan 10	within coordinates
Lysmd1	LysM, putative peptidoglycan-binding, domain containing 1	53 bp upstream
Rr367480	regulatory region 367480	within coordinates
Rr580822	regulatory region 580822	1446 bp distal
Rr580823	regulatory region 580823	within coordinates
Rr580824	regulatory region 580824	64 bp proximal
Rr580825	regulatory region 580825	1715 bp proximal
Scnm1	sodium channel modifier 1	61 bp upstream
Tssr34419	transcription start site region 34419	122 bp upstream
Tssr34420	transcription start site region 34420	47 bp upstream
Tssr34421	transcription start site region 34421	18 bp upstream