rs33100387 SNP Detail

Summary

• ID
  rs33100387
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95040860 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCTGCAGT CGGGGTGTTC
  TTGCTATGGT GAGTAGGTCC TACTTCTGTC AGAGTACTCC ACCACCAACT CCCAGGTTTC
  CCGATCTCCA CCCCTTACAC TTCACTTCCA GCCAAAGAGT CCTATTATAC TCCTGAACTC
  CTTAGTGACA AAAGTTTGTT GAGCCTTTGA TCCCCGAATC CCCAGGCTTG ATCCACTCTT
  Y
  GCTCTCACCG TCCATCCCGC AGCATCAGTG CCTCGTCCTC AGGGATGTAA CTAGCCAGCA
  GGTCCCCAAC TCTCCGTTTC TGCAGGGAGC AGGATAGGAG AAATGAGTAA GAGGGACGGA
  TGGAAATGAA ATAGTATGGA TAAGGAGTCA AATGGCACAC GGGGCTATGC AGATCATAGG
  GTAGTAGGGG TCACCACTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46771838	NES10666778	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33100387					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46771838	NES10666778	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95040860 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13498	CpG island 13498			258 bp proximal
D3Umi10	DNA segment, Chr 3, University of Michigan 10			178 bp proximal
Lysmd1	LysM, putative peptidoglycan-binding, domain containing 1			539 bp upstream
Rr367480	regulatory region 367480			357 bp upstream
Rr580822	regulatory region 580822			960 bp distal
Rr580823	regulatory region 580823			452 bp proximal
Rr580824	regulatory region 580824			550 bp proximal
Scnm1	sodium channel modifier 1			Intron
				Noncoding-Transcript-Variant
Tssr34419	transcription start site region 34419			349 bp downstream
Tssr34420	transcription start site region 34420			387 bp downstream
Tssr34421	transcription start site region 34421			440 bp downstream