rs33099399 SNP Detail

Summary

• ID
  rs33099399
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95031569 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAAATCTG CCTGTCTCTG
  CCTCCCAAGT GCTACGATTA AAGGCATGTG CCCCCTCTCC CTTTTAAAAA AGTTAAAAAG
  GAAAAAAAAA TTACTACAAG GCTTTGAGCT CACCATGAAG TTCATGCTGC TCTCCGTCTT
  GTAGCAGTCC TATCTTAGTG TCCCCTGTCA AGGGAATTCA GGTGTGAGGC ACAATGGCTG
  K
  TACATTGATA CATCATCTTC TATTCAGTGC TTTGAGCAGA ACTGGTACCC TACCGTAGGA
  GTCATCTGAT TCTCCACTGG AGGACTCTGC TTGCAGGGAA AGAGGACATG TCATGGCTGA
  TACTGGCCAC TAGAGGCTCT CAGGGCTGGG CAAGGTATGG GGTCTGTGTA TATGTGATCT
  CCCACCACTC CCCACCTGGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46771733	NES10667106	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33099399					SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46771733	NES10667106	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95031569 () rs orientation: forward

Symbol	Name	Function Class
D3Umi9	DNA segment, Chr 3, University of Michigan 9	1617 bp distal
Rr580819	regulatory region 580819	46 bp proximal
Rr580820	regulatory region 580820	268 bp proximal
Tmod4	tropomodulin 4	mRNA-UTR
Tssr967	transcription start site region 967	179 bp upstream
Tssr30490	transcription start site region 30490	1726 bp downstream
Tssr30491	transcription start site region 30491	193 bp upstream
Tssr30492	transcription start site region 30492	224 bp upstream
Tssr30493	transcription start site region 30493	1931 bp upstream
Tssr30494	transcription start site region 30494	1948 bp upstream
Tssr30495	transcription start site region 30495	1960 bp upstream
Tssr30496	transcription start site region 30496	1982 bp upstream
Vps72	vacuolar protein sorting 72	1207 bp downstream