rs33099252 SNP Detail

Summary

• ID
  rs33099252
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:154870376 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCTCTCAC TCCACCAGCA
  TGCTTGTGAA GAGATCCAAC CACTGGGCTC CTGCCCTGCC CCCACTCTGG GAATTCCAGC
  TTATATCTGT CACTTGTGGC TGTGCGACCC TGGGACACTC TTGGAGTCTT TTTGGAACCC
  CGCCCCCTTT TCTCATGCTC AGAGCAGGGT CACAAGTCTT AGTGACTGCT GTTGAAGCCT
  R
  AGACAAAACC CACTGCACCA GCAGCAGGAC AGCAAAGAGC TAGCCGGCCA CAGCAGGCTT
  TTACCAGCTT CGGGTTGTCC TCACTATGCT GGGACACTGA GCAGGACCTC AAAATAACAT
  CCCTCATCCT GGCACCGACT TGCTGGTTGC TGGCTCAACT CAGGTTCTTT AGAACCTCCT
  TAGTCCCAGC CTCCCTCCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46771936	NES10983073	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33099252					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46771936	NES10983073	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:154870376 () rs orientation: forward

Symbol	Name	Function Class
Rr1566	regulatory region 1566	822 bp proximal
Rr606263	regulatory region 606263	within coordinates
Rr606264	regulatory region 606264	872 bp proximal
Rr606265	regulatory region 606265	1489 bp proximal