rs33097279 SNP Detail

Summary

• ID
  rs33097279
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:94894514 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGGGAAAT GGTTTCCCTT
  TCTTCCTCCA TTATATGAAA CATTCACTAA ACAACTAGCT GTTTCCCTGT ACAGTGTGCA
  AAAGGATGGA GGATAAAATA CTGTTCTTGG ACTAGGAACT GATAAAGTTT AACAAAGCTC
  TAGCTCCAAT ATAAGGATCT AGTTAGTGTA TATCTTGATT AAAAAGTTTA CGGAAGCATT
  M
  AGTATGCACG TGCCTTACTA AAATGAACTA CACATTTTTC TAAAGCCCAG GCAAGACATT
  GTATAGGAGA ATTCCTGGGT GTGCCCTGAC ACTGGCTCCC AGTCTTGGTT GTCCTTGCGG
  GTTCTGGTTA ATCCCGTGTT CCTCCCACTA TGGAGGAGCT CCAGAAGAGT GAAATGGGGG
  CTCCGGGAGA GAAGAGGCCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss46771013	NES10635545	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs33097279					SNP	A	A	A	A	A	A	C	A	A	A	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46771013	NES10635545	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:94894514 () rs orientation: forward

Symbol	Name	Function Class
Pi4kb	phosphatidylinositol 4-kinase beta	Intron
Rr580773	regulatory region 580773	101 bp proximal