rs33097041 SNP Detail

Summary

• ID
  rs33097041
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:94927397 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCGTAAGAT TGGAGAAGAG
  ATGCCAGGTA TGGTAGTGTA ACCCTTTCAC CTAGCATTTG TGAGGCAGAG CCACACTGAT
  ACATGGAGTG AGATCCAGGA CTGTCAGCCA GGGCTACATA ATGAGACCCT GTCTCTGATG
  GATTCCACAA TCCCACAAGG TGGCAGGAGA TAATCAACCG AGAGTTCTCT GACCACACTG
  Y
  TCTGTGGGAC ACATGGGTGC TTACACACAC ACACACACAC ACACACACAC ACATTTTTTT
  AAGAATGGAG GAGGAAGAAA GCAAATGAGA ACATTGACTA GTCAAAGGAG AGAGTGGGTA
  CCAATAAGAG TGCAATGAGG AAGCAGCTTT GGAGGGGATG GGATTGTTTG CATTGCTGGA
  GATTGAACAT AGCCTCACAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46771121	NES10634608	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33097041					SNP	T	T	T	T	T	T	C	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46771121	NES10634608	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:94927397 () rs orientation: forward

Symbol	Name	Function Class
4930481B07Rik	RIKEN cDNA 4930481B07 gene	within coordinates
Rr580785	regulatory region 580785	923 bp distal
Rr580786	regulatory region 580786	1207 bp proximal