rs33097037 SNP Detail

Summary

• ID
  rs33097037
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:94924149 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTGTTCGG AGTGGAACCT
  AGTGCTTCAC CCAGTCCAAG CAAGCAGCCC ACCGACATAG CAGCTTGGCG AGTGTTTTTG
  TTTTGTTTTG GCGATACTGA TTATTGGACG TTGGGAGTCG CACACGCTTG GCAGGTGCAC
  TCGTAACACT GAAGCTACTC TATACCCTAT CACTTTTTGG GACAGGGTTT CCACTAAGTT
  R
  TCCTGCCTGC CTAGTAACTA GGGCTACACT GTTGCGCCAT CAGGCCCAGG TTTGGGTAAA
  GCTTTTAAAA GAAGGCTCTG TTACCTCCCC TTGGACTCCC ATAGCAGTGG ATCCAAAAAA
  TTCAGGCTTA TGTATGGGAG GAATCTTGGA ACCACTACAT TCCACATGAT GACATCAGAC
  AAATCGTTCT ACCTCCCTAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46771115	NES10634834	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33097037					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46771115	NES10634834	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:94924149 () rs orientation: forward

Symbol	Name	Function Class
4930481B07Rik	RIKEN cDNA 4930481B07 gene	within coordinates
Cpgi13494	CpG island 13494	55 bp distal
Rr367477	regulatory region 367477	11 bp downstream
Rr580781	regulatory region 580781	1611 bp distal
Rr580782	regulatory region 580782	1081 bp distal
Rr580783	regulatory region 580783	within coordinates
Rr580784	regulatory region 580784	293 bp distal
Rr580785	regulatory region 580785	1947 bp proximal
Tssr30486	transcription start site region 30486	1087 bp downstream
Tssr30487	transcription start site region 30487	1053 bp downstream
Tssr34413	transcription start site region 34413	1592 bp upstream
Tssr34414	transcription start site region 34414	1376 bp upstream
Zfp687	zinc finger protein 687	1390 bp upstream