rs33094398 SNP Detail

Summary

• ID
  rs33094398
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:94937745 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTAGGAAGAG GGAACATAGT CTCATAAGTT CTCCTACCAT
  TTAAGTTTGT GTTGCTGTAT AGACACAGAC ACACCACCCA AGCCAGGCTG TCGTTTTTCT
  R
  AATTGAGAAA GGCACACATA AAGTCAGGCA GAGTGGCCCA CGCCTTTTAA TCCCAGCACT
  TGAGAGGCAG AGGCAAGCAG ATCTCTGAAT TTGAGTCCAG                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46771178	NES10634070	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33094398					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46771178	NES10634070	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:94937745 () rs orientation: forward

Symbol	Name	Function Class
D3Mit76	DNA segment, Chr 3, Massachusetts Institute of Technology 76	1402 bp distal
Gm65650	predicted gene, 65650	within coordinates
Rr580791	regulatory region 580791	1447 bp distal
Rr580792	regulatory region 580792	902 bp distal
Rr580793	regulatory region 580793	256 bp distal
Rr580794	regulatory region 580794	1839 bp proximal