rs33094225 SNP Detail

Summary

• ID
  rs33094225
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:94981076 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTCAGAGC TCTTAATCAC
  TGAGCCATCT CTCCAGCCCT AATTACATTT TTTCAATGCG TACACAAACT CACGAGTGTG
  TGTATGTGTA AGCCCAGGCA TAGAAGCCTT GGTACATGTG CTGAAGTCAG AAGAAAACTT
  GCAGGCCTCA ACCATCCACC ATGTGGGTGC TGGGGCTCAA ACGCAGGTTG CTAGGCTCTA
  Y
  CTTAGCTGCT GGAGCCAGCT CACTAGCCTT AATGAGCTGT TTGTTTGTTT GTACTGTAAG
  ATACTCCACT GTCCAGAAGC ATTCGGCAAA GCCTGCTGTA GAAATTCTCT AATCCCATTA
  TCTAAATATA CAACAAGGTT AAGGGATGAT GAGAACCCTT GAAAGTGTCC TGAGGCTGAG
  CAAAGTCAAG TTGTCTAGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46771424	NES10631428	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33094225					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46771424	NES10631428	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:94981076 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pip5k1a	phosphatidylinositol-4-phosphate 5-kinase, type 1 alpha			Intron
				Noncoding-Transcript-Variant
Rr580809	regulatory region 580809			512 bp distal