rs33092656 SNP Detail

Summary

• ID
  rs33092656
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:94935152 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGGTATCT CTGTGAAGTC
  CTGGCTATTC TGGAACTCGC TCTGTAGACC AGGCTGGCCA CAAACTCAGA GATTCAACCA
  TTTCTGCCTC CAAGTTCTGG AATTAAAGTT GTGTACCACT ATTCCCCCCA AAGTGTTTCC
  TCACTCAGTC CTAAAGTCCC TCCCACCATC CTATTGGTGG GTAGCAGCTG ACACAGAACA
  K
  GTGCATGGCA CAGCTGTTGC TGACACCCAT GTGCCTGCAC AGCCATCTGG CCAGTCCTCG
  TTTCCTGCTG TCTTGTATCA GTAAGCTTCC CTTCACCCTC TTGGCTGTTG CCGTCTCACT
  CTCACAGACT CTTCCTGTCA GCTGATCTTT CACTTTTGCG TTCACCTCAC ACCCCAATCG
  ATCACTGCAC CCCTTCTTCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46771151	NES10634189	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	G	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33092656					SNP	T	T	T	T	T	T	G	T	T	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46771151	NES10634189	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:94935152 () rs orientation: forward

Symbol	Name	Function Class
D3Mit76	DNA segment, Chr 3, Massachusetts Institute of Technology 76	1063 bp proximal
Gm65650	predicted gene, 65650	within coordinates
Rr580790	regulatory region 580790	within coordinates
Rr580791	regulatory region 580791	553 bp proximal
Rr580792	regulatory region 580792	1670 bp proximal