rs33092654 SNP Detail

Summary

• ID
  rs33092654
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:94934721 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCGTATCA TCTGGACCCT
  GATACTATGT GTGGCATCTA TTTCTGTCCA GAGCTTAAAC ATGGTGTACT AGGAGCCTCC
  CTGCTATAAA GCAGGTGAGA CGACGCTAAC AAAAAACCAC CAGACCCCCC GGGATTTATT
  GTCGATGGTT GCCATGTAAT GGGAAAGTGA GCCACCAAAA GGCTGCAGAT GGCTCAGCTG
  R
  TTAGAGCACT TGATGTTCTT GCAGGTCTCT CTACCCACAC AGGTGCCAGA ATTAAAGGCA
  TGTGCTCTGG CTAGGGGGCC TCCTTTTAAG GGCTTTGGGA GTGGCATTTT ATTGGAGTTC
  CAGTTGGGAG CTGCACTTCT GTGCATCTCT GGCTCCACCC CTGCATTCAT TGCAGCAGTG
  TGGCAGTGTT CACTTTGGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46771148	NES10634267	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	G	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33092654					SNP	A	A	A	A	A	A	G	A	A	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46771148	NES10634267	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:94934721 () rs orientation: forward

Symbol	Name	Function Class
D3Mit76	DNA segment, Chr 3, Massachusetts Institute of Technology 76	1494 bp proximal
Gm65650	predicted gene, 65650	within coordinates
Rr580789	regulatory region 580789	1866 bp distal
Rr580790	regulatory region 580790	within coordinates
Rr580791	regulatory region 580791	984 bp proximal