rs33091652 SNP Detail

Summary

• ID
  rs33091652
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:94934674 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCCTAAAA TGCATGAATG
  CTGACTAGTA AGTTATCTAG GCATTTACAG CGTATCATCT GGACCCTGAT ACTATGTGTG
  GCATCTATTT CTGTCCAGAG CTTAAACATG GTGTACTAGG AGCCTCCCTG CTATAAAGCA
  GGTGAGACGA CGCTAACAAA AAACCACCAG ACCCCCCGGG ATTTATTGTC GATGGTTGCC
  R
  TGTAATGGGA AAGTGAGCCA CCAAAAGGCT GCAGATGGCT CAGCTGATTA GAGCACTTGA
  TGTTCTTGCA GGTCTCTCTA CCCACACAGG TGCCAGAATT AAAGGCATGT GCTCTGGCTA
  GGGGGCCTCC TTTTAAGGGC TTTGGGAGTG GCATTTTATT GGAGTTCCAG TTGGGAGCTG
  CACTTCTGTG CATCTCTGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46771145	NES10634265	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	G	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33091652					SNP	A	A	A	A	A	A	G	A	A	G	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46771145	NES10634265	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:94934674 () rs orientation: forward

Symbol	Name	Function Class
Gm65650	predicted gene, 65650	within coordinates
Gm65661	predicted gene, 65661	1992 bp upstream
Rr580789	regulatory region 580789	1819 bp distal
Rr580790	regulatory region 580790	within coordinates
Rr580791	regulatory region 580791	1031 bp proximal
Tssr34415	transcription start site region 34415	1996 bp upstream