rs33091647 SNP Detail

Summary

• ID
  rs33091647
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:94934060 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCAGGCTGG CCTCAAACTT
  ACAGAAACCT GCCTGCTTCT GCCTCCCACT TGGAGGCACC ACCACACCTG GCCAATACAA
  AGATGCTATG TTATTTTGTT ATTATTGTTT TAGTTTTCAA GACAGGATCT CACTATGTAT
  CTTAGAACTC AAGACACTGG GTGCTGGGAT CACAGACTGG CACTGTGTCC CATGTAAAGT
  Y
  AGAAAGTTTT TTTTTCCTCT AGGCCTTGGT TATCTTCTCA TGTTTATGTT TATGAGCTAT
  TATGGATTAA TGTTCATATA CCATATGAGC TTAGAGACCA AAGTGCATTT CCACCATTTG
  TTGAATGGCT ACAGAGTTGT CCCCTGGTAG CCTCCGGTCT CCAACTCACT TCGAGAACAA
  CCTTCTCCTA TTCAGAGCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46771139	NES10634278	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33091647					SNP	T	T	T	T	T	C	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46771139	NES10634278	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:94934060 () rs orientation: forward

Symbol	Name	Function Class
Gm65650	predicted gene, 65650	within coordinates
Gm65661	predicted gene, 65661	1378 bp upstream
Rr580787	regulatory region 580787	1868 bp distal
Rr580788	regulatory region 580788	1389 bp distal
Rr580789	regulatory region 580789	1205 bp distal
Rr580790	regulatory region 580790	501 bp proximal
Rr580791	regulatory region 580791	1645 bp proximal
Tssr34415	transcription start site region 34415	1382 bp upstream