rs33090717 SNP Detail

Summary

• ID
  rs33090717
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:96594786 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATATATTTA CTTAACCTTT
  CTCTGTCATA GATAGCAGTT AAAAAATATA AGCAAGATTT ACGCCTGTCT TCCCAAGCCA
  AATAACATCT AATTCTTGGT TACAAAGTCA CATCTACACC CTGGGTAGCC AGGGAGGTAA
  GAACTGATTC AAGCTGAAGC AAAAGCAAGC AAAAAAGGAA CAAACAAAAC CAAGTGGCAG
  R
  TAAGTGTTTT CTAGGCCAGA GAATGCAAGC AAGAGAGGCC TGTAGCCTTT TGTCACAAAG
  TTAAACTGGG TCCAGTATTA CCATATGCCC TACATGTTCC AAGGAACTAG AGAGCCAATT
  TAGCCGATTA AGTATTCACA TTGTGAAGTA ATGGCAACTA ATTATTGAAC AAGCCTAAGT
  ACACAATTCA CAGCATGCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
ss45236104	mCV24364639	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
rs33090717					SNP	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:96594786 () rs orientation: forward

Symbol	Name	Function Class
Lrrc4c	leucine rich repeat containing 4C	Intron
Rr561438	regulatory region 561438	420 bp distal