rs33085041 SNP Detail

Summary

• ID
  rs33085041
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:126045542 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGAGCTGT ATCTCCTTGC
  GCATCTCCTG CACACTCACC TGGAGGGGCC TAAGGGCCCC TTTCCCTACT CACCTGTGAT
  GTGCCAGACC CCAACCCGCC CCCCAGCCAC CACCGCAGCC CCAGCAGCAG AGACAGCCAG
  CGCGACGCAG CGCAGCGCAT CCCAGCCCAG CAGACTGGAC GGCCAGGACA CAGCCTCACA
  R
  CTGCCAGTGC CCACAGTAAC GGCATGGCCC TCATGTGGAA GCGGGCAGTG GCAACAGCAG
  CAGTGGCTCC AGGGAGAGCT GCGAGCGCGC GCAAGTGACC GCAGGGGTGC GCATGGGCTG
  GTGGTGGGCG AGCGGCAGGG TACAGCAGCT GGGGCAGGGC GGGTAGGGAA ATACCTGTGA
  CACGGTTCAA AGACATGGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47254093	NES11563265	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33085041					SNP	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47254093	NES11563265	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126045542 () rs orientation: forward

Symbol	Name	Function Class
Atp2a1	ATPase, Ca++ transporting, cardiac muscle, fast twitch 1	Intron
Rabep2	rabaptin, RAB GTPase binding effector protein 2	463 bp downstream
Tssr2394	transcription start site region 2394	1268 bp downstream
Tssr69022	transcription start site region 69022	312 bp downstream
Tssr69023	transcription start site region 69023	1535 bp upstream
Tssr74663	transcription start site region 74663	316 bp upstream
Tssr74664	transcription start site region 74664	211 bp downstream
Tssr74665	transcription start site region 74665	536 bp downstream
Tssr74666	transcription start site region 74666	566 bp downstream
Tssr74667	transcription start site region 74667	627 bp downstream
Tssr74668	transcription start site region 74668	796 bp downstream
Tssr74669	transcription start site region 74669	835 bp downstream
Tssr74670	transcription start site region 74670	1071 bp downstream
Tssr74671	transcription start site region 74671	1114 bp downstream
Tssr74672	transcription start site region 74672	1127 bp downstream
Tssr74673	transcription start site region 74673	1272 bp downstream
Tssr74674	transcription start site region 74674	1301 bp downstream
Tssr74675	transcription start site region 74675	1310 bp downstream
Tssr74676	transcription start site region 74676	1525 bp downstream
Tssr74677	transcription start site region 74677	1550 bp downstream
Tssr74678	transcription start site region 74678	1582 bp downstream
Tssr74679	transcription start site region 74679	1606 bp downstream
Tssr74680	transcription start site region 74680	1624 bp downstream
Tssr74681	transcription start site region 74681	1651 bp downstream
Tssr74682	transcription start site region 74682	1665 bp downstream
Tssr74683	transcription start site region 74683	1863 bp downstream
Tssr74684	transcription start site region 74684	1966 bp downstream
Tssr74685	transcription start site region 74685	1992 bp downstream