rs33084941 SNP Detail

Summary

• ID
  rs33084941
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:157149187 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTCAACTCCT CTCCTCTCTA CAAGTCTCCC TCCTATTTTT
  ACATTTTTGT TGTTTCTGTT TTTGCCTGTT TTGAATTTTA AAAACAGGAA TTAAATATAC
  W
  TATAGATGTG TGGGTTTTTT TTCAAAGTAC AGGAAAATAA TAATGAATAT GAGTCTTTCT
  CCATGCTCTC AGTTCAGTCA TCCTCAGAGA AGTCTATCT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45235209	mCV24816121	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	T
ss148096467	ENSMUSSNP1459994	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		T
ss320585486	CHEV_2_157133003	CHEVERUD	SCREENING_POP	f	SNP					T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33084941					SNP	A	A	A	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:157149187 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rpn2	ribophorin II			Intron
				Noncoding-Transcript-Variant
Rr568466	regulatory region 568466			87 bp distal
Rr568467	regulatory region 568467			653 bp proximal