rs33079701 SNP Detail

Summary

• ID
  rs33079701
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:154627049 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGGACCTG GGCCTACTCA
  GTCTAAAGGG GCCTACACGA GAGGACTCAG CACGGTCAGG CTTGGGAACC CGAGTTCTTC
  ATACACCCTT GTCTGCCTAC AGACCCAGAA GCTGTGATGG AATATTTGCA AAATGGAGTA
  CAGGAATTCC ACCTTTCCCA GAGTCCACAC CTGCCTGCTG CAGGGTCCCA GAGAAGGCTC
  Y
  GAGCCACTGG GTGCTGCAGT GTTGCTTGGC CAGGGTGAGA TGAACGTGTT CTCCTAGCAC
  CTGGTCTCTG CTCTGTTTCC CTGCCTCTCT GCCCTCAGCA GCATGGTGGA GGAGCAAGGG
  GTTAAATGCT GAGCAAACGC TATGACAACT GTCACCAAAC TATTTATAGA CACATTTATC
  TCTGTAGCTC CTACCAAACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46768721	NES10990290	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33079701					SNP	T	T	T	T	T	T	T	T	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46768721	NES10990290	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:154627049 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm70000	predicted gene, 70000			687 bp downstream
Prdm16	PR domain containing 16			Intron
				Noncoding-Transcript-Variant
Rr606203	regulatory region 606203			882 bp distal
Rr606204	regulatory region 606204			838 bp proximal
Rr606205	regulatory region 606205			1066 bp proximal