rs33077867 SNP Detail

Summary

• ID
  rs33077867
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:172197554 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTAACATC TATGCAAAGA
  AACACATTAA AAGCAGCAAT AAAACTGCTC CTACCCACAG CCACGGATCT TCCAAACCTA
  GCCCCGCTCT CAGGCCTCTA CCCAGCAGCC AGAACACAGC AAGAGTTGAG GTGAAGCAAC
  TAAAGCACCG TATAAGCCAG CAAGGCGCAC AGAGCTGCTC CTGCCTATGT GATCTTTAAG
  W
  AGACCAGGAG CCAGGAAACC ACTTTAAGAT GTAAGCCATT GTGTGTCTCT AGTTTCTTAA
  GCAGACCAAG TGAATGGCTT ACAGTCTGAA ACAAATAAAA GCCTTTGTAA AAGTCTGCGG
  TCTGCCGTCT GGTAAGCCAT CACTGCCGCC AGGAAGAGCG CCATGGGAAT GTGGCACTCC
  TCTGCATGTA GGATAGTCAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45234588	mCV23771671	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	T	T
ss148314478	ENSMUSSNP4731025	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A		T
ss320618308	CHEV_2_172181134	CHEVERUD	SCREENING_POP	f	SNP						A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33077867					SNP	A	A	A	T	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172197554 () rs orientation: forward

Symbol	Name	Function Class
Aurka	aurora kinase A	556 bp downstream
Fam210b	family with sequence similarity 210, member B	mRNA-UTR
Rr571655	regulatory region 571655	1852 bp distal
Rr571656	regulatory region 571656	215 bp distal
Rr571657	regulatory region 571657	within coordinates