rs33075802 SNP Detail

Summary

• ID
  rs33075802
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:71302786 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CAGATTTGCC TATTGGCCAA ACTTATATAG GCATCTTCTC AACCGAGATT CACTTTTTCT
  AGATATGCTT CTAGCTTGTG CTAAGTTTAC ATGAAACTAG CCAGAGCACC AGACTGGATG
  GTAGAGGACT ATAATCCCAG TTTCTTGGGA GGCTGAAGTA GGAGGATCTC AAGTTTATAG
  CCTGCCTGGG ATGAACAACT TAATGATACC CAACTCTTTT TTTTTCTTTC TTTCTTCCTT
  TCTTCCTTCC TTCCTTTCTT TCTTTCTTTC TTTCTTTCTT TCTTTCTTTC TTTCTTTCTT
  Y
  CTTTCTTCCT TCCTTCCTTC CTTCCTTCCT TTCTTTAATT AGATATTTTC TTTATTTACA
  TTTCAAATGT TATCCCTTTT CCTGGTTTCC CCTCCAAAAA CCCCCTCCCT CTACCACCAC
  CACCCCACCC AGACCCAACT CTTGGAAAAA AAAAAGAGAG AAAGAGAGTG AGCGAGTGGG
  TGAGAGAACA CTGGGGGGAC CCAGCTAGGA CTGGAGTGCT TGCAGCATGT GTAGTCCCCG
  GTACCTCAGG AATAACAACA AAAATCACTG GAGAATTATT TAATTTGAGC TGTTTAAATA
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45234500	mCV25086853	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs33075802					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:71302786 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Metap1d	methionyl aminopeptidase type 1D (mitochondrial)			Intron
				Noncoding-Transcript-Variant
Rr558754	regulatory region 558754			1041 bp distal
Rr558755	regulatory region 558755			1949 bp proximal