rs33073672 SNP Detail

Summary

• ID
  rs33073672
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:94566788 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGTC TTAGTGGCAC CAAAGGCAGT
  Y
  GCTTCCCAAG CTTAGGCTGG GATCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46768402	NES10724022	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C	T	T	C	C		T	C	C	T		C
ss135506950	ENSMUSSNP1308482	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						T
ss320840509	CHEV_3_94463403	CHEVERUD	SCREENING_POP	f	SNP												C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33073672					SNP	C	C	C	C	C	C	C	T	T	C	C	C	T	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46768402	NES10724022	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:94566788 () rs orientation: forward

Symbol	Name	Function Class
BC021767	cDNA sequence BC021767	1108 bp downstream
Cpgi13486	CpG island 13486	1100 bp distal
Gm15234	predicted gene 15234	within coordinates
Gm65306	predicted gene, 65306	1083 bp upstream
Rr580673	regulatory region 580673	1094 bp distal
Rr580674	regulatory region 580674	743 bp distal
Rr580675	regulatory region 580675	516 bp distal
Rr580676	regulatory region 580676	598 bp distal
Rr580677	regulatory region 580677	within coordinates
Tssr34401	transcription start site region 34401	603 bp upstream
Tuft1	tuftelin 1	609 bp upstream