rs33072833 SNP Detail

Summary

• ID
  rs33072833
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:94566733 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTACATCTT TCCTCAGAGT
  TCTACCACAC AGGTAGAAAG GCAGGCACCA AAGACCAGCT CACTCGGACT AGTCTAAGCC
  AGTCTGGCAG GTGCTTTTTC CTGGCAAGTA GCCCAGGTCG AAGTCAAAGC CAGCTAAGCT
  CTGGGTGGGG CTTGCTTTGC AGAAACTAGA CTTATATGGT AGGGAGAGGC GGGACACATG
  R
  CCTTAAAAGG AATTTGCACC CTAGAGAAAG AGTCTTAGTG GCACCAAAGG CAGTTGCTTC
  CCAAGCTTAG GCTGGGATCT TGAGGGCTGA CCTCTGGTAG AAGGCTATCT CACTGTGTGA
  TGGTCACAGG GACAGCAGGC GCGGTGTGTA AGGTCTAATC CGATTGAATA GGCAGTACCA
  CTAGAGGTAG CAATTCGTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss46768393	NES10724019	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	A	A	G	G	A	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs33072833					SNP	G	G	A	A	A	G	G	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46768393	NES10724019	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:94566733 () rs orientation: forward

Symbol	Name	Function Class
BC021767	cDNA sequence BC021767	1163 bp downstream
Cpgi13486	CpG island 13486	1045 bp distal
Gm15234	predicted gene 15234	within coordinates
Gm65306	predicted gene, 65306	1028 bp upstream
Rr580673	regulatory region 580673	1039 bp distal
Rr580674	regulatory region 580674	688 bp distal
Rr580675	regulatory region 580675	461 bp distal
Rr580676	regulatory region 580676	543 bp distal
Rr580677	regulatory region 580677	within coordinates
Tssr34401	transcription start site region 34401	548 bp upstream
Tuft1	tuftelin 1	554 bp upstream