rs33072311 SNP Detail

Summary

• ID
  rs33072311
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:163934717 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCGTCTGTC AGGGCTGCTT
  AGAGTACAAG AGTGAACTAA GGACCGGCTG GGCAGGCTTA GATTCATATT CTATCCCCAT
  CTCAGATTCA TGTTTATTCA TTCATTCTGT CTGTCTGTCT GTCTGTCTGT CTGTCTGTCT
  CTCTCTCTCT CTCTCTCACA TACATACACA CACACACACA CACCCCTCTC AAATTTGTAT
  Y
  TTAAAGTTTT ATTTTTGTGT GTTGGGTGCA GTGCCTTTGG AAAGCCAGAA GAGGGTGTTG
  GATCTTTTGG AGCTGGAGTT ATAGGTGGTT GGGAGCCACA TGGTTGTTGG GAGCCAAATT
  CAGGTCCTCC AGAAGACTAG GGAGTGTTCC TAACCACTGA GCTGGCCGGC CTGCTTGTCC
  TTTAGTTTCT AAAGTTTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45233544	mCV23179543	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T	T
ss148219224	ENSMUSSNP915220	ENSEMBL	ENSEMBL_Sanger	f	SNP		C			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33072311					SNP	C	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163934717 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
6330575P09Rik	RIKEN cDNA 6330575P09 gene			436 bp downstream
Rr569556	regulatory region 569556			41 bp proximal
Rr569557	regulatory region 569557			1537 bp proximal
Stk4	serine/threonine kinase 4			Intron
				Noncoding-Transcript-Variant