rs33070394 SNP Detail

Summary

• ID
  rs33070394
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:94565677 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCCATAAA TCCTCTGGGC
  GAAAGGTAGA ATCTGGTACC AATTCCGTAG TTGTCTGAGA CCTATCCCGC CCACTCATGC
  TCTCCCCTCT CTCCTAGGAT TCGACCCTCT GCCCCCTTTC CTAGTAAAAG GATCGCCATC
  ACAGAAGTCT TTGAAGGGGT TCTGAGGCCA TCGGGAAACG CGAAAAGGCG TAACCCACCT
  K
  GGCCGGCGCA ACGTCCGAAA CAGCGCAGGG ATCCGGTCCC TCGAGCGTCT TCCACGACCC
  AATCTAGCTG CCCACGAGAC GCCTGAGTAA CGCGCCCCAT GCCCGAGCCG GGGCTACAGT
  GTCCGCGCCA AGGACAGGAC CTCCCCAGCC CTGGAGCTGC CAGTGTTTCG TCCTGTGCTT
  CCCACTCCAC AGTCCGCCAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46768354	NES10724001	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	G	T	G		G	T	T	G		G
ss135506932	ENSMUSSNP4226290	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
ss320840508	CHEV_3_94462292	CHEVERUD	SCREENING_POP	f	SNP											T					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33070394					SNP	T	T	T	T	T	T	G	G	T	G	T	G	T	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46768354	NES10724001	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:94565677 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13486	CpG island 13486			within coordinates
Gm15234	predicted gene 15234			358 bp upstream
Gm65306	predicted gene, 65306			within coordinates
Rr580673	regulatory region 580673			within coordinates
Rr580674	regulatory region 580674			18 bp proximal
Rr580675	regulatory region 580675			420 bp proximal
Rr580676	regulatory region 580676			492 bp proximal
Rr580677	regulatory region 580677			596 bp proximal
Tssr34401	transcription start site region 34401			473 bp downstream
Tuft1	tuftelin 1			Intron
				mRNA-UTR
				Splice-Site