rs33068503 SNP Detail

Summary

• ID
  rs33068503
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:154610007 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAGCCTCTC TCTCTCTGCA
  CTCACAGAGG TAACAGAGTG GCTGGTGGGC CAGGCCACAT GGTGTAAGTG GCTGGGGTGG
  TTAACAGAAG GCCTCTTTCT CGGGACCGAC TATGGAGAGA TCTGGGCCCT GGGTCCTGTT
  TTTGTTTTTG TTTTGTTTTT TTGTTTTTCT TTTCCTGAAC CACGATCAGG AGATAAAGCA
  S
  GTAGGCTAAG TTAGGAAGAG CTAGGAGGGC CACCAGAACT CACTGGCTTT GCTGAGCTAC
  CTTCATACTT TTGAGGGAGA CAAAGAAACA GCATATGGTC CGTGAAAAAA AAAAAGTATA
  GTTCACACAT GGAAAAATTA TCCTAAAGCT ATAAGGAGAA AAGAGGTCTC ATTACTGTCC
  CCAAGCCCAG GCCACTCAGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46768445	NES10991096	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	G	C	G	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33068503					SNP	C	C	C	C	C	C	C	C	C	C	G	C	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46768445	NES10991096	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:154610007 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Prdm16	PR domain containing 16			Intron
				Noncoding-Transcript-Variant
Rr606198	regulatory region 606198			461 bp proximal
Rr606199	regulatory region 606199			1788 bp proximal