rs33068016 SNP Detail

Summary

• ID
  rs33068016
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:79959910 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCAAGGCTT TTGTCTCTTA
  ATTGATCTGG AAGCGGCACT TAAAAATACA GCACACTTCC TGAATAAATG CAGCCAATAT
  TAATGACAAA CACGGAGAAG AGTCACACAT AGAGCCGTAC AGGAGACAGA CCCCAGAGCT
  CCACAGGTTG TTATTGAGAG AGTATGTCCA TCAAGTGATG CTGGAATCGT GCTTATTCAT
  Y
  TTCTCCTAGC AACTCTACAC AGTGGGTAAC TGCCAATTTA ACCAGGGAAA ACACAGCAGC
  TGCGTTCAGC CCGCTCTGTG AATCCTTTGA GGATTAAAAA ATAAATAAAA TGAAATGGGT
  GTGAATGCAT GTGTGTGAGT GTTGAAGGCA AAGGGTGTGT GTGTGTGTGT GTGTGTGTGT
  GTGTGTGTGT GTGTACGCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss45233316	mCV25097269	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss146789736	ENSMUSSNP3675608	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs33068016					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:79959910 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11847	CpG island 11847	318 bp distal
Pde1a	phosphodiesterase 1A, calmodulin-dependent	Intron
Rr560061	regulatory region 560061	137 bp distal
Rr560062	regulatory region 560062	within coordinates
Tssr24917	transcription start site region 24917	570 bp upstream
Tssr24918	transcription start site region 24918	543 bp upstream
Tssr24919	transcription start site region 24919	428 bp upstream
Tssr24920	transcription start site region 24920	393 bp upstream
Tssr24921	transcription start site region 24921	374 bp upstream
Tssr24922	transcription start site region 24922	323 bp upstream
Tssr24923	transcription start site region 24923	288 bp upstream
Tssr24924	transcription start site region 24924	262 bp upstream
Tssr24925	transcription start site region 24925	17 bp upstream