rs33067891 SNP Detail

Summary

• ID
  rs33067891
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:94564915 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAAACCTCCA TATTTCTAGG CAAAAATGTC GAAGGAGACA
  GTGAACAGAC TTCAATGATC AGCTGTACTC TGAACTTCAA ATGAGCACCC ATTCTACAAC
  W
  ATTCTTTGAA GAGCCATAAT CCAGCTGTAG CTGGGTTAGC TTTGCCTCAA GGACATGCTG
  AGACAGGCAG GCGCATAGGA ATCAGATGGG GGGGGTGGG                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46768330	NES10723989	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A	T	T	A	A	T	A	A	T
ss135506911	ENSMUSSNP2747384	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33067891					SNP	A	A	A	A	A	A	A	T	T	A	A	T	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46768330	NES10723989	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:94564915 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13486	CpG island 13486	541 bp proximal
Gm15234	predicted gene 15234	1120 bp upstream
Gm65306	predicted gene, 65306	within coordinates
Rr580673	regulatory region 580673	219 bp proximal
Rr580674	regulatory region 580674	780 bp proximal
Rr580675	regulatory region 580675	1182 bp proximal
Rr580676	regulatory region 580676	1254 bp proximal
Rr580677	regulatory region 580677	1358 bp proximal
Tssr34401	transcription start site region 34401	1235 bp downstream
Tuft1	tuftelin 1	Intron