rs33067888 SNP Detail

Summary

• ID
  rs33067888
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:94564904 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGTTGGCT GGACTTTGGT
  TTTGTTTATC TGATTTGGTC AACCTCTCTT ACCTGGGGTA GGCTGGGGGG TGGGCTGGGC
  TTTGGGCAAT GTCAAAACTT GTAATGTGAA AGAAACCTCC ATATTTCTAG GCAAAAATGT
  CGAAGGAGAC AGTGAACAGA CTTCAATGAT CAGCTGTACT CTGAACTTCA AATGAGCACC
  Y
  ATTCTACAAC AATTCTTTGA AGAGCCATAA TCCAGCTGTA GCTGGGTTAG CTTTGCCTCA
  AGGACATGCT GAGACAGGCA GGCGCATAGG AATCAGATGG GGGGGGTGGG GGCGCAAACT
  CCCCATCACT TTGGCTCTCA TTTCATTCTC CACAACAACT TGGAAATAAA TTAATTAGCA
  CAGATCTATG GAGTATTTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46768327	NES10723986	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33067888					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46768327	NES10723986	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:94564904 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13486	CpG island 13486	552 bp proximal
Gm15234	predicted gene 15234	1131 bp upstream
Gm65306	predicted gene, 65306	within coordinates
Rr580673	regulatory region 580673	230 bp proximal
Rr580674	regulatory region 580674	791 bp proximal
Rr580675	regulatory region 580675	1193 bp proximal
Rr580676	regulatory region 580676	1265 bp proximal
Rr580677	regulatory region 580677	1369 bp proximal
Tssr34401	transcription start site region 34401	1246 bp downstream
Tuft1	tuftelin 1	Intron