rs33065955 SNP Detail

Summary

• ID
  rs33065955
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:154571014 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTTACTTT CAACCTTTCT
  AGTTATAGAA ATAACCTTGA TATTGATAGA ATTATATTAA TGCACTTCAA CCTGACCCTA
  CTTATCGATG GCTTGTTTGT TAGGGCGATC TTTAATAATC ATAAGTGAAG AGAAAGCTCT
  TAGATCTCCT ATGATGGAGG CCCTAGGGGC TCGACCCCGG GCCACTCAGC TCCTCTGGGG
  Y
  TGTGACATAA CTTTCTCACT GGGGTTTGAC GGGCTATTTA TTATCTGGAG GCAGGAGTGC
  ACCAAAGTGA AACAAGTCCA GATCCTGTAA GGAGGAGAGG GAAGGAGAGA AAGGAGGAAG
  ATGAGGAGGA GGGAGAGGAG GAGGAAGAAG AGGAAGGGGA GGAGAGGGAG GAAGAAGATG
  AAGAGGGGGG GAAAGAAGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46768034	NES10992069	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33065955					SNP	C	C	C	C	C	C	C	C	C	C	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46768034	NES10992069	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:154571014 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Prdm16	PR domain containing 16			Intron
				Noncoding-Transcript-Variant
Rr606181	regulatory region 606181			1596 bp distal
Rr606182	regulatory region 606182			1335 bp proximal