rs33064981 SNP Detail

Summary

• ID
  rs33064981
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:154510925 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGACTGTGG GTCCTTAGTA
  CTATGATGTC ATCTTCTCTA AGTCCCTCCC TGGATTTATA GTCTGGCAGA GACTTGGGCA
  CAGAAACAAG CATCAAAGGT TTGGCACCTA CTTGGCCGAG AGTTCCAGGT AGACGAGGCC
  AACTCTGGCA TGGAACAGCC CCATAGCAAG TCCACACTGC CCCAGTTCAG TCCCAGGGGC
  Y
  AGGAATCTAG TACTCACGGT AGTTCACGTT GGAGCCACTG AGCTAGGCTA TGAGACCTCC
  TCTATGCCAC AGGCAGCTTC TGGTCCTTGT CCTGTAATCC TGAAAGTCTC CTTCTGTCCC
  CATCCCCTCC CTTCTTCCCA GCCACCCCTG TAGCAGCCCT GGGCTTCTGC AACTGGAAAG
  CTTTCCCCAG GAGCCAGGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46767092	NES10929761	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33064981					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46767092	NES10929761	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:154510925 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Prdm16	PR domain containing 16			Intron
				Noncoding-Transcript-Variant
Rr927	regulatory region 927			1491 bp distal
Rr606166	regulatory region 606166			1310 bp distal
Rr606167	regulatory region 606167			282 bp proximal