rs33064055 SNP Detail

Summary

• ID
  rs33064055
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:25154767 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGACAGCCCC AGGCTGGGGT TGGTCAGCCT ACTGTTTACT
  TCAGAGATTT GGGGGAAGTA GTGCAGAGTT CCAGAATCCC TTTGGAATGG GTAATTCCAA
  M
  TAATTGCAGG TCTACCTTCA GAAAATAGCC TGGCCTGTGA TTTGGAGGTA GCTGGCATAG
  TCCTATGGAG TTTAGCTTGG ACAGATATCC AGAGCCTGG                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss45232328	mCV25419262	ABI	CRAMUS_MOUSE	f	SNP	C	A
ss146377543	ENSMUSSNP149627	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs33064055					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:25154767 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Tprn	taperin			Intron
				Noncoding-Transcript-Variant
Tssr16682	transcription start site region 16682			1545 bp downstream
Tssr16683	transcription start site region 16683			1536 bp downstream
Tssr16684	transcription start site region 16684			1408 bp downstream
Tssr16685	transcription start site region 16685			1387 bp downstream
Tssr16686	transcription start site region 16686			1374 bp downstream
Tssr16687	transcription start site region 16687			824 bp downstream
Tssr16688	transcription start site region 16688			465 bp downstream
Tssr16689	transcription start site region 16689			442 bp downstream
Tssr16690	transcription start site region 16690			802 bp upstream