rs33062661 SNP Detail

Summary

• ID
  rs33062661
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:154509614 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACATTCAC AAAACCCATG
  CTAGGGGTGC AGGCGCAGCT GGGGTTGGCC TGGGTCAGAG ATCACAATGG GTCCTCAAGG
  CCCTGGGTGA TGACTCCCAC CCAGGTGGGG CACACAGAAG AGTGTGGGGT GATTGCACGG
  CAGGACCCCG GAGGGCGTGA CTGTCAAGGT CCTGAAACGA CAGCTTCTGG TTTCTGTGGA
  Y
  GTTTTAATCT TTTGTTTTTC CCTGTTTTGC TTCTTGTTTT GCCTGCATTG GGAGGGGGGG
  GGGCAGACTT TGCACCTCTG AGGCCCTCTG TCCTGCCTGA TTTGAGAGGT GGGAGCCAGT
  CTCTGCACCC CTGAGGCCCT CCTGCTCCTC CACACCGGGG CTCCTGGGAC ACTGCGCTCC
  TATGCCTGGC AAGCCTTCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46767062	NES10929751	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33062661					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46767062	NES10929751	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:154509614 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Prdm16	PR domain containing 16			Intron
				Noncoding-Transcript-Variant
Rr927	regulatory region 927			180 bp distal
Rr606165	regulatory region 606165			1839 bp distal
Rr606166	regulatory region 606166			within coordinates
Rr606167	regulatory region 606167			1593 bp proximal