rs33062658 SNP Detail

Summary

• ID
  rs33062658
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:154507619 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGGCTTGGA GGCCCGCTCT
  AATCAATGTA AACTAGAGAG AGCTGGGGGA GACTTCGCTT GGAAGGTTAG AAAAGTAAAA
  ACGTGATTAA GAGTGAAGTC ACCGGGGATG CTCTCAATTG AAGCCTTTGA AACCAGCTCG
  GATGGATCAG CTTTCCCTCA CCAGGAGACT TCTTGTCAGT TTCCATGTAA AGTAAAAAGA
  Y
  GAAAAATGCA AAAGACAAAA GCGTTTGGGG CCCTCCTCTC CAGGCAGCCA GGGACAGCCA
  CCATGTTCTC TTGGCATGTT AAAAAAAAAA AAAAAAAAAA AAAGTCTAAC AAAGAACAAC
  TAGCTGGGCT TACTTCTGAC AGAAACAGGG AGAGTGAAGC TCACCGAGTC TCCCTGCCAC
  ACACCACATC TTTCAGCAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46767059	NES10929750	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33062658					SNP	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46767059	NES10929750	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:154507619 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Prdm16	PR domain containing 16			Intron
				Noncoding-Transcript-Variant
Rr927	regulatory region 927			within coordinates
Rr606165	regulatory region 606165			within coordinates
Rr606166	regulatory region 606166			1458 bp proximal