rs33062655 SNP Detail

Summary

• ID
  rs33062655
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:154504325 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCCTTGAT GTTGCCCTTG
  ACGTGAGGAG TTCCTTACAA GACTGTGAAG CAGTAGCTGA AATGCAGAGC CTGCACTCTC
  TCTTTCCCAC CTGGGGCCAG GGCCCAGCCA GCAGTATGCT GACTCCATCC TTACTCCATC
  CTGAGTGTGT CTCACCCTTC TGCTCCACTG ACTCCACAGC CTGGTCAATG ATGGCTTCTG
  R
  TTCCTCCTTA GTCTCTACTC AAGGCAGAAT CCCATCGGCT TGAACTACCA GTCTTCCTGT
  AGCTCAGCCC TTCCCAGACA GAGAATGCTA AACTCTGGCA CGATGCCCAA GGATGGCAGA
  AGAAAACACA CCCTCCTCCT ATTCAAGTCT CAGCCCTCGA TGGCAGCATT AAAAAAGAAG
  ACTCAGGCTT AGTTCACATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46767056	NES10929791	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33062655					SNP	A	A	A	A	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46767056	NES10929791	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:154504325 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Prdm16	PR domain containing 16			Intron
				Noncoding-Transcript-Variant
Rr606162	regulatory region 606162			639 bp distal
Rr606163	regulatory region 606163			725 bp distal
Rr606164	regulatory region 606164			575 bp distal