rs33061350 SNP Detail

Summary

• ID
  rs33061350
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:154487070 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGGCATGC CCCTCCCCCA
  ACAAGGCTGC CTCTGCTGCG CTGGTCTGTG TCTTCAAGAG ATAGAGCCAG GAAACTCCAT
  GGACAGATGG GACAGCCCAC TCTCTAACTC TGAAAGAGAA CTGAAGTCAG CAATTGGGTC
  AGAGCAAGGA GTACCTACTG CATCCCTGAT TCTTGGTTTG CTGTTTAGGT ATCTGGGCTG
  W
  ACTGGGCATT TTGGAGTGTG TTGATGATGA CACTGAAGGC TAAATATCCA GGGGTCTCCT
  CTGGTCTGTC CACTTGTGAG TCAGGCGAGC TTCTGGCTAG GTTTGGAAGG AAGCTCTCAC
  CTCCTGGCAG CTGGCCGAGC TTGCTTTTCT TCCTTTAAGG TCAGCTTTCT ATTCTCTCCC
  TCAGGAGCCA CCTTTAACCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46766852	NES10930334	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33061350					SNP	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46766852	NES10930334	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:154487070 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Prdm16	PR domain containing 16			Intron
				Noncoding-Transcript-Variant
Rr606156	regulatory region 606156			894 bp distal
Rr606157	regulatory region 606157			260 bp distal