rs33059701 SNP Detail

Summary

• ID
  rs33059701
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:125565896 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCGG GCATCCTCTG TGTGGCTCGG
  K
  TCCGATCCCG GCCGGCCCAC CCCTT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45231938	mCV22613578	ABI	CRAMUS_MOUSE	f	SNP	T	G	G	G
ss147486046	ENSMUSSNP1813288	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33059701					SNP	T	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:125565896 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12200	CpG island 12200	342 bp distal
D2Dcr70	DNA Segment, Chr 2, Derry C. Roopenian 70	1660 bp proximal
D2Mit398	DNA segment, Chr 2, Massachusetts Institute of Technology 398	1618 bp proximal
Rr367290	regulatory region 367290	653 bp upstream
Rr564270	regulatory region 564270	99 bp distal
Rr564271	regulatory region 564271	96 bp distal
Rr564272	regulatory region 564272	902 bp proximal
Shc4	SHC (Src homology 2 domain containing) family, member 4	mRNA-UTR
Tssr26008	transcription start site region 26008	439 bp upstream
Tssr26009	transcription start site region 26009	285 bp upstream
Tssr26010	transcription start site region 26010	253 bp upstream