rs33056664 SNP Detail

Summary

• ID
  rs33056664
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:154411148 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTTGGAGA CATCACTTCA
  ACAAAATGGG CTGGGCTTGG GAGGGGATGG CCCTCTCTTG GTCCAACTAT GTTCTTATCA
  TTAATATTGA ATGTGAGGGA GGAGACGGCG GGGAGCTCTG TCAGAGCACC CATGATTTGG
  TTAGGGTTGC AAGGATGGGG AGCAGTTTTT CCTCTTCCTT CCACAAATGC CCCCTGTTCT
  K
  CTGGACATGT GTGTGGGGTC CTCTGGCCTG CCACTATGGC TCAGAATGAA GGGGCATGTC
  TTGCAGTCTT CTGGGTACCC AGGACCCTGG GAATCCATGT ATACTTGGGT CCTGTCCATC
  CCAGTGAGGA CGAGTCTTCA TGGTTCTTTA AGTGGTTCTG CTTTGGGGTC TGAGGAAGCT
  ACATTTTGAG CTTGTCTCAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46765988	NES10931825	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33056664					SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46765988	NES10931825	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:154411148 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Prdm16	PR domain containing 16			Intron
				Noncoding-Transcript-Variant
Rr606135	regulatory region 606135			933 bp distal
Rr606136	regulatory region 606136			1847 bp proximal
Rr606137	regulatory region 606137			1903 bp proximal